Malta: Gozo, Comino, Sea Caves, and Blue Lagoon Cruise

Reviewed · COMINO & THE BLUE LAGOON CRUISES

Malta: Gozo, Comino, Sea Caves, and Blue Lagoon Cruise

4.8 · 280 reviews From $32 Operated by Comino Land Charters Malta · Bookable on GetYourGuide
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Clear water, tight group, and caves close up. This Comino cruise stitches together Crystal Lagoon and the Blue Lagoon with stops for Sea Caves, Halfa Rock, Santa Maria Bay, and Elephant Rock.

I love the small-boat setup, capped around 24 passengers, because it keeps the trip feeling personal and makes the views feel closer. I also like the pacing: a 45-minute swim at Crystal Lagoon, a full hour at Blue Lagoon, then another 45-minute beach stop at Santa Maria Bay.

One consideration: Blue Lagoon now has a QR code rule for stepping onto the sand, and rougher seas can cut into swim time.

Key points before you go

  • Small group (up to 24 passengers) means easier boat access and quicker, more direct viewing of the caves.
  • Two lagoon swims: Crystal Lagoon (45 min) and Blue Lagoon (1 hour) plus Santa Maria Bay (45 min).
  • QR-code entry for Blue Lagoon (from 1 May 2025) if you want to go ashore.
  • Included extras like stand-up paddleboard use, swim noodles, onboard shade, and an onboard toilet.
  • Caves and rock photo stops (Santa Maria Caves and Elephant Rock) add variety beyond beach time.

More Comino and Blue Lagoon boat trips we have swum and snorkelled off

From Cirkewwa to Comino: finding the boat without stress

You start at Cirkewwa, meeting at the Cirkewwa Kiosk Café area. The boat is behind the kiosk. You’ll descend the stairs at the back and then turn left around the corner to find it.

This matters more than it sounds. Comino cruises can feel chaotic before departure, but here you get clear physical directions and a setup that’s built for quick boarding. Also, you’re not riding on a huge ferry. You’re on a smaller boat, which helps with getting around the islands and staying close to the action.

The tour runs about 3 to 4 hours (starting times vary by availability). That short duration is a real win if you’re only in Malta for a few days and want a “big view” day without committing your entire schedule.

Passing Comino Tower and the Monte Cristo angle

Malta: Gozo, Comino, Sea Caves, and Blue Lagoon Cruise - Passing Comino Tower and the Monte Cristo angle
Once you leave Cirkewwa, you’ll cruise past Comino Tower. It’s the one made famous through the movie The Count of Monte Cristo, so it gives you a fun pop of story as you go.

Even if you don’t care about film trivia, the real value here is the approach. From the water, you see how the coast shifts between pale golden shoreline and deeper blue water. It’s also a nice warm-up before the lagoons, since you get moving time plus quick scenery between swims.

On the route, you’ll also pass Gozo and an area called Gebla tal Halfa (Halfa Rock) for sightseeing, plus San Niklaw Bay (the hotel area on Comino). These are short passes, not long hikes, but they break up the day so you’re not stuck in one single spot.

Crystal Lagoon stop: clear water and a 45-minute “go time” (not a long wait)

Malta: Gozo, Comino, Sea Caves, and Blue Lagoon Cruise - Crystal Lagoon stop: clear water and a 45-minute “go time” (not a long wait)
Crystal Lagoon is on the western side of Comino, and this stop is built around a simple idea: give you enough time to actually enjoy the water, not just pose for a photo and rush away.

You get about 45 minutes that includes swimming and snorkeling time, plus scenic cruising on the way in. This is also where stand-up paddleboarding fits in (the tour includes a stand-up board that you can use).

What I like about this stop for you: it’s timed well. Forty-five minutes is long enough to cool off, try snorkeling, and still have time to relax. If you’re traveling with kids or with friends who don’t all snorkel, this stop still works because the water is calm enough that you can enjoy it from the surface.

A small practical tip: bring your towel and sunscreen. You’ll be hopping in and out, and the sun in Malta doesn’t play nice even when the breeze feels cool.

More Gozo day trips we have caught the ferry across for

Blue Lagoon and the new QR-code rule (how to avoid a last-minute headache)

Blue Lagoon is the headline, and with good reason. The sunlight catches the sandy shallows, creating that famous mix of light blues where you can often spot fish while snorkeling.

But starting 1 May 2025, there’s a specific regulation: anyone who wants to step onto the sand at Blue Lagoon needs a valid QR code. It’s free, and you must get it in advance from www.blcomino.com. Entry is in time-specific slots: Morning / Afternoon / Sunset.

Here’s the practical strategy I’d use:

  • Match your tour schedule to the correct QR slot before you go.
  • If you’d rather not fuss with the QR code, you can stay on the boat while at Blue Lagoon. If you remain aboard, you do not need the QR code.

You’ll have about 1 hour at Blue Lagoon. During that time, you can swim, snorkel with the gear available onboard (snorkeling gear itself is not listed as included, but you can rent it onboard), or bask on the shore. This is also where the day can feel either relaxed or hectic depending on crowd levels, but being on a small boat usually helps you avoid the worst bottlenecks.

If you care about simply getting in the water and enjoying it, this stop is worth building your day around. If you’re the type who wants lots of shore time for walking around, plan your QR timing carefully.

One more note: optional activities may be offered around this stop (the schedule references parasailing during the Blue Lagoon slot). Since that isn’t listed as included, treat it as something you’d pay for separately if you decide to do it.

Sea Caves, Halfa Rock, and getting close without the big-boat squeeze

After the lagoons, the cruise leans more scenic and “close-up” for the rest of the route. You’ll pass places like Ħalfa Rock (Gebla tal Halfa) and see Sea Caves from the water.

The advantage of the smaller boat shows up here. Larger boats can block views, and schedules can feel more rigid because everyone is loaded together. With a small group, you’re more likely to get angled for better cave viewing and have a smoother flow moving between stops.

Plus, the route includes photo moments. Santa Maria Caves and Elephant Rock are both part of the later segment, and those stops are designed for short viewing rather than a long landing hike. That’s smart: you get the wow factor, then you keep moving.

Santa Maria Bay: another real swim stop with a balanced 45 minutes

Santa Maria Bay is where the day gets grounded back into simple beach enjoyment. You’ll cruise to the bay and then get about 45 minutes to swim, snorkel, or go ashore.

This stop can be a big deal if you don’t want your day to be only about two lagoons. Santa Maria Bay gives a different feel: more “beach time” and a chance to stretch out, even if you’re not snorkeling the whole time.

You’ll also see marine life when conditions allow, and stand-up paddleboarding is again part of the time window. If you’re traveling with mixed interests (some people want water time, others want just scenery), this stop is a good compromise.

Keep expectations realistic: if the sea is choppy, swimming may be limited. The captain can adjust based on conditions, and you’ll still be able to see the key sights. That flexibility is part of why this kind of cruise works.

Santa Maria Caves and Elephant Rock photo time

Near the end, you’ll do a short sightseeing run that includes Santa Maria Caves followed by Elephant Rock. Both are timed as quick stops—mainly for viewing and photos.

This is where the tour earns its variety. You don’t spend the entire day only in water. You also get rock formations and cave angles that you can’t replicate from shore.

If you’re a photographer, pay attention to where you’re standing on the boat while cruising past. On smaller boats, even a slight shift in position can change the angle enough to make one photo look “flat” and another look three-dimensional.

What’s included (and what you’ll still want to bring)

The included perks are built around comfort and water time:

  • Stand-up board use is included
  • Swim noodles are included
  • Shade on board (useful if the sun is strong)
  • Onboard toilet
  • Life jackets available (unless there’s an emergency, in which case you should ask crew)
  • Permits for the lagoons included
  • Marina fees included
  • Free parking at the meeting point

You also get the scheduled swim time at Crystal Lagoon (45 min), Blue Lagoon (1 hour), and Santa Maria Bay (45 min), plus sightseeing at Halfa Rock, San Niklaw Bay, Santa Maria Caves, and Elephant Rock.

What’s not included:

  • Food and drinks (you can buy at beach stops or onboard)
  • Snorkeling gear rental (you can rent onboard)

What you should bring:

  • Swimwear and beachwear
  • A towel
  • Sunscreen
  • Cash
  • Anything else you need for water comfort

This is one of those trips where “small comfort items” make the day better. A quick snack plan helps too, because you may not want to rely on finding food at every stop.

Weather and sea conditions: why the captain’s judgment matters

Comino and the Blue Lagoon region can look calm from a distance, but conditions change. When the sea gets rough, swimming time can shrink. That’s not a failure of the tour; it’s a safety and comfort call.

The good news is the experience is built for real-world conditions. Instead of pretending everything is perfect, the schedule can adjust while still keeping you focused on the big features: lagoons, caves, and rock formations.

If you’re prone to motion sickness, this tour is listed as not suitable for you. If you get seasick easily, protect yourself and choose a calmer alternative.

Price and value: is $32 a fair deal for this route?

At $32 per person, this cruise is priced in a way that feels practical for what you’re getting. You’re not only visiting one beach. You’re doing multiple high-demand stops: Crystal Lagoon, Blue Lagoon, Santa Maria Bay, plus caves and rock viewing.

Value shows up in a few specific ways:

  • Included time for two lagoon swims plus a third bay stop
  • Included gear basics like noodles and stand-up board use
  • Included comfort items like shade and an onboard toilet
  • A small-group boat that keeps you from losing time to overcrowding

Is there any “gotcha” on value? The biggest one is your Blue Lagoon plan. If you want to go ashore, you must handle the QR code timing correctly. If you don’t, you may feel a little locked into staying on the boat during that hour.

Also, water conditions matter. When conditions are rough, you may not get the full swim experience you expected. Still, the cave and rock viewing remains the backbone of the trip.

Who should book this Comino, Gozo, and caves cruise?

This works best for:

  • People who want big water views in a short window
  • Families and groups who want a smaller boat feel and multiple swim stops
  • Couples who want lagoons plus caves without committing to an all-day ferry or land tour

It’s a poor fit for:

  • Wheelchair users (not suitable)
  • Pregnant women (not suitable)
  • Anyone with motion sickness
  • Very elderly travelers beyond the stated limit (not suitable for people over 95)

If your travel style is simple: show up, get on the water, swim where it’s clear, and get back with photos and stories, you’ll probably enjoy this.

Also, if you like learning while you travel, expect an English/Maltese live guide. Many groups note the guide’s friendly, helpful vibe and clear explanations at each stop, including cave highlights.

Should you book this cruise?

Book it if you want a compact, high-impact day: Crystal Lagoon and Blue Lagoon swims, plus caves and rock photo stops, with included comfort basics like shade and a toilet. It’s also a strong choice if you like smaller-group experiences, since you spend more time enjoying the water and less time stuck in big-boat bottlenecks.

Consider skipping (or choosing a different plan) if:

  • You don’t want to deal with the Blue Lagoon QR code time slot when you want to step onto the sand
  • You strongly prefer long shore exploring over short swim stops
  • You’re very sensitive to boat movement or motion sickness

If you’re in the middle and want a practical Malta highlight without overplanning, this is one of the easier “yes” decisions.

FAQ

Do I need a QR code for Blue Lagoon?

Starting 1 May 2025, if you want to step onto the sand at Blue Lagoon you must present a valid QR code from www.blcomino.com. If you remain on the boat during Blue Lagoon, you do not need a QR code.

Where is the meeting point?

You meet at Cirkewwa at the Cirkewwa Kiosk Café. The boat is behind the café; you reach it by descending the stairs behind the café and turning left.

How long is the tour?

The duration is listed as 3 to 4 hours, depending on the starting time shown in availability.

How much time do we spend at Crystal Lagoon?

You get about 45 minutes at Crystal Lagoon, including swimming and snorkeling.

How much time do we spend at Blue Lagoon?

You get about 1 hour at Blue Lagoon for swimming and snorkeling/free time.

Is snorkeling gear included?

Snorkeling gear is not listed as included. Snorkeling gear can be rented onboard.

Are stand-up paddleboards included?

Yes. Stand-up boards are free to use.

Is there an onboard toilet?

Yes, there is an onboard toilet included.

Is food and drink included?

No. Food is not included, but you can buy it at beach stops. Drinks can be bought onboard or at beach stops.

Can I cancel for a refund?

Yes. Free cancellation is offered up to 24 hours in advance for a full refund.